Cap'n Jazz - "Oh Messy Life"
Lion Of The North - "Ghost Stories"
Indian Summer - "I Think Your Train Is Leaving"
Don Martin Three - "End Of This Tunnel" (Fire As A Metaphor 3)
Indian Summer - "Touch The Wings Of An Angel...Doesn't Mean You Can Fly"
Angel Hair - "Lazy Eye"
Angernon Cadwallader - "Casual Discussion In A Dome Between Two Temples"
Rites Of Spring - "For Want Of"
Saetia - "Venus And Bacchus"
Funeral Diner - "Direct Hit"

I actually haven't owned End on End for a couple years, as it was in my Alpine when it got jacked back in the 10th grade. I just bothered to download it recently for whatever reason.
"For Want Of" is very good, but I was always way into the chord progression and background vocals in "Drink Deep." That finale's intense too; I was bumping it in my dorm room and I got even a little bit more embarassed than I usually am about emo/hardcore in college.

If I did an indie-emo list it would probably just consist of Braid and Cap'n Jazz- I guess maybe an Anniversary song too, but I'm never too sure about the Anniversary.

Oh, and I like the Angel Hair inclusion.

Cap'n Jazz - Rocky Rococo
Mineral - If I Could
Off Minor - Practice Absence
Drive Like Jehu - Sinews
Bear vs. Shark - Song About Old Roller Coasters
Braid - Killing A Camera
Sunny Day Real Estate - Grendel
Texas Is The Reason - Johnny On The Spot
American Football - But The Regrets Are Killing Me

This thread needs more Cap'n Jazz

No order.

Ampere - The Old World is Behind Us
Circle Takes the Square - Non Objective Portrait Of Karma
I Hate Myself - Not Waving but Drowning
Cap'n Jazz - Oh, Messy Life
Christie Front Drive - Away
Sunny Day Real Estate - In Circles
Hot Cross - Fortune Teller
Hot Cross - Finger Redux
Owls - Everyone Is My Friend (tough to decide between this and What Whorse You Wrote Id On)
Saetia - Closed Hands

Most threads need more Cap'n Jazz : )

I'm gonna count Post- Emo, because my list would really suck without it.

Empire! Empire!- How to Stay Afloat in a Sea of Change
ATDI- Farenheit
The Saddest Landscape- The Stars in January
Empire! Empire!- With Your Greatest Fears Realized, You Will not be Comforted
Castevet- Stranger, You Know
Monument- Breakfast
My Heart To Joy- Empty Homes
Touche Amore- Nine
Hightide Hotel- Elementary Biology
Monument- Busy Being Bees

Changes all the time, naturally, but at the moment -

Hour of the Star - Rootbeer and Running Shoes
The Candyland Carcrash - The Pain Will Double if You Leave Me Now
The Candyland Carcrash - Baffled on the Seventh Floor
Catjaw - Start Me.
The Pine - Boarded Room
Superstar - Marshall Tucker
Lonely Broken Radio - Bigger Miracles
Lion of the North - There's Always Next Year
The Shivering - Every Breath
Arrows - Clean Sheets Aren't Just For Keepers.

Good god, there is post emo now? I might be behind on this one since I don't listen to emo, but I still find this kind of funny.

I haven't heard this term really, but seeing how the "emo" category spans 25 years or so of music I'm not that surprised that "post-emo" is being used.